Variant report

Variant	rs16932424
Chromosome Location	chr8:66942692-66942693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66860378..66862946-chr8:66940064..66944249,3	MCF-7	breast:
2	chr8:66933795..66936922-chr8:66937756..66943533,5	K562	blood:
3	chr8:66750304..66757030-chr8:66936519..66946979,24	MCF-7	breast:
4	chr8:66743264..66756293-chr8:66938648..66949139,49	MCF-7	breast:
5	chr8:66928177..66937337-chr8:66937383..66943347,17	MCF-7	breast:
6	chr8:66931688..66936639-chr8:66937276..66942801,8	MCF-7	breast:
7	chr8:66861177..66863828-chr8:66940545..66942693,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000147570	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10092425	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11987232	0.83[EUR][1000 genomes]
rs16932391	0.86[EUR][1000 genomes]
rs16932394	0.87[CEU][hapmap]
rs16932396	0.86[EUR][1000 genomes]
rs16932415	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs16932422	1.00[CEU][hapmap]
rs16932423	1.00[CEU][hapmap]
rs16932436	1.00[CEU][hapmap]
rs16932440	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16932441	0.83[EUR][1000 genomes]
rs4636189	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs57633306	0.84[EUR][1000 genomes]
rs61038961	0.88[EUR][1000 genomes]
rs6985305	0.86[EUR][1000 genomes]
rs6988654	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6990185	0.86[EUR][1000 genomes]
rs6990672	0.86[EUR][1000 genomes]
rs6998320	0.86[EUR][1000 genomes]
rs7001192	0.86[EUR][1000 genomes]
rs7001442	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7010453	0.86[EUR][1000 genomes]
rs7014758	0.87[CEU][hapmap]
rs7016261	0.86[EUR][1000 genomes]
rs7017603	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7813023	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7815318	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7815325	0.87[CEU][hapmap]
rs7827556	1.00[CEU][hapmap]
rs953177	1.00[CEU][hapmap]
rs9693171	0.86[EUR][1000 genomes]
rs9693187	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66933800-66944400	Weak transcription	Pancreas	Pancrea
2	chr8:66934000-66943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:66934000-66944400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:66935400-66945800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:66938600-66943000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:66938600-66945800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:66938600-66946400	Enhancers	Fetal Thymus	thymus
8	chr8:66938600-66946600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr8:66938600-66946800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr8:66938800-66945400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:66938800-66945600	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:66938800-66946400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:66939000-66942800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:66939000-66944400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:66939200-66944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:66939200-66944400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:66939600-66944000	Weak transcription	NHDF-Ad	bronchial
18	chr8:66939600-66944400	Weak transcription	NHLF	lung
19	chr8:66939600-66952800	Weak transcription	Psoas Muscle	Psoas
20	chr8:66940000-66944800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:66940000-66945000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:66940000-66945200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:66940200-66943600	Enhancers	Primary B cells from cord blood	blood
24	chr8:66940200-66946000	Enhancers	Thymus	Thymus
25	chr8:66940400-66944600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:66940400-66945400	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:66940600-66944400	Weak transcription	Hela-S3	cervix
28	chr8:66940800-66943200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr8:66940800-66944000	Weak transcription	A549	lung
30	chr8:66941000-66943800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:66941000-66944600	Weak transcription	Placenta	Placenta
32	chr8:66941000-66945400	Weak transcription	Dnd41	blood
33	chr8:66941400-66942800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr8:66941400-66942800	Enhancers	GM12878-XiMat	blood
35	chr8:66941400-66944200	Enhancers	Primary T cells from cord blood	blood
36	chr8:66941400-66944400	Weak transcription	Esophagus	oesophagus
37	chr8:66941400-66945200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:66941600-66944200	Weak transcription	HMEC	breast
39	chr8:66941600-66944400	Weak transcription	Lung	lung
40	chr8:66941800-66942800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:66941800-66944000	Weak transcription	NHEK	skin
42	chr8:66941800-66944400	Weak transcription	Spleen	Spleen
43	chr8:66941800-66945400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr8:66942000-66948200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr8:66942200-66943800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:66942200-66944400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr8:66942200-66944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:66942200-66944400	Weak transcription	Small Intestine	intestine
49	chr8:66942400-66944400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr8:66942400-66944400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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