Variant report

Variant	rs7016261
Chromosome Location	chr8:66912426-66912427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66752639..66754285-chr8:66912341..66913991,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11987232	0.89[EUR][1000 genomes]
rs16932389	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932391	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932394	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932396	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932422	0.81[EUR][1000 genomes]
rs16932423	0.81[EUR][1000 genomes]
rs16932424	0.86[EUR][1000 genomes]
rs16932440	0.89[EUR][1000 genomes]
rs16932441	0.89[EUR][1000 genomes]
rs28558271	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28671004	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4636189	0.89[EUR][1000 genomes]
rs57633306	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58423697	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59514911	1.00[ASN][1000 genomes]
rs60924938	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61038961	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357987	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985305	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989783	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990185	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990672	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001192	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001442	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009416	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009487	1.00[ASN][1000 genomes]
rs7010453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017603	0.81[EUR][1000 genomes]
rs73237254	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237256	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237268	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237302	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.83[EUR][1000 genomes]
rs7813023	0.89[EUR][1000 genomes]
rs7815318	0.87[EUR][1000 genomes]
rs953177	0.83[EUR][1000 genomes]
rs9693171	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693187	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66910000-66914000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:66910200-66914200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:66910200-66914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:66910200-66915200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:66910200-66915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr8:66910200-66917800	Enhancers	Primary T cells from cord blood	blood
11	chr8:66910400-66913800	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:66910600-66912800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:66911600-66912800	Enhancers	Hela-S3	cervix
14	chr8:66911800-66912800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr8:66911800-66912800	Weak transcription	Thymus	Thymus
16	chr8:66911800-66912800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr8:66911800-66917200	Weak transcription	Small Intestine	intestine
18	chr8:66912000-66913000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:66912000-66917000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:66912000-66917000	Weak transcription	Fetal Intestine Small	intestine
21	chr8:66912000-66918400	Weak transcription	Primary B cells from cord blood	blood
22	chr8:66912200-66912600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:66912200-66912600	Weak transcription	Fetal Thymus	thymus
24	chr8:66912200-66913200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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