Variant report

Variant	rs16932391
Chromosome Location	chr8:66903175-66903176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66837771..66840064-chr8:66901193..66903433,2	MCF-7	breast:
2	chr8:66894580..66896752-chr8:66901785..66904644,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11987232	0.89[EUR][1000 genomes]
rs16932389	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932394	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932422	0.81[EUR][1000 genomes]
rs16932423	0.81[EUR][1000 genomes]
rs16932424	0.86[EUR][1000 genomes]
rs16932440	0.89[EUR][1000 genomes]
rs16932441	0.89[EUR][1000 genomes]
rs28558271	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28671004	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4636189	0.89[EUR][1000 genomes]
rs57633306	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58423697	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59514911	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60924938	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61038961	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357987	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985305	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989783	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990185	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990672	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998320	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009416	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009487	1.00[ASN][1000 genomes]
rs7010453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016261	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017603	0.81[EUR][1000 genomes]
rs73237254	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237256	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237268	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237302	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.83[EUR][1000 genomes]
rs7813023	0.89[EUR][1000 genomes]
rs7815318	0.87[EUR][1000 genomes]
rs953177	0.83[EUR][1000 genomes]
rs9693171	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693187	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66894800-66904000	Weak transcription	Primary T cells from cord blood	blood
2	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
3	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:66900600-66904600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66900800-66904400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:66902200-66903200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:66903000-66903400	Weak transcription	Placenta	Placenta
8	chr8:66903000-66903400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr8:66903000-66903800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links