Variant report

Variant	rs61357987
Chromosome Location	chr8:66910162-66910163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753202..66755807-chr8:66909407..66912061,2	K562	blood:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16932389	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932391	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932394	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932396	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932415	0.93[EUR][1000 genomes]
rs16932422	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16932423	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28558271	0.93[ASN][1000 genomes]
rs28671004	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34178379	0.82[EUR][1000 genomes]
rs57633306	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58407124	0.80[EUR][1000 genomes]
rs58423697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58556742	0.83[EUR][1000 genomes]
rs59321109	0.80[EUR][1000 genomes]
rs59514911	1.00[ASN][1000 genomes]
rs60866025	0.83[EUR][1000 genomes]
rs60924938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61038961	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989783	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990185	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998320	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999945	0.80[EUR][1000 genomes]
rs7001192	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001442	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006472	0.82[EUR][1000 genomes]
rs7009416	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010453	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014758	0.82[EUR][1000 genomes]
rs7016261	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237302	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7815325	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs953177	0.91[EUR][1000 genomes]
rs9693171	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693187	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66905000-66910200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66905000-66910200	Weak transcription	Thymus	Thymus
3	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66910000-66911000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:66910000-66912000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr8:66910000-66912200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:66910000-66914000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links