Variant report

Variant	rs73252340
Chromosome Location	chr8:66896608-66896609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66894580..66896752-chr8:66901785..66904644,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11987232	1.00[ASN][1000 genomes]
rs11994535	0.83[ASN][1000 genomes]
rs11995869	0.83[ASN][1000 genomes]
rs16932389	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16932391	0.83[EUR][1000 genomes]
rs16932394	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16932396	0.83[EUR][1000 genomes]
rs16932415	0.85[EUR][1000 genomes]
rs16932422	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932423	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932440	1.00[ASN][1000 genomes]
rs16932441	0.90[ASN][1000 genomes]
rs2357662	1.00[ASN][1000 genomes]
rs28671004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34178379	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3922725	0.83[ASN][1000 genomes]
rs3922726	0.83[ASN][1000 genomes]
rs55636103	0.83[ASN][1000 genomes]
rs56200451	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57033118	0.83[ASN][1000 genomes]
rs57633306	0.84[EUR][1000 genomes]
rs57896411	1.00[ASN][1000 genomes]
rs58122259	0.83[ASN][1000 genomes]
rs58165070	0.94[ASN][1000 genomes]
rs58407124	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58423697	0.91[EUR][1000 genomes]
rs58556742	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58681615	0.83[ASN][1000 genomes]
rs59321109	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59436889	0.83[ASN][1000 genomes]
rs60109751	0.83[ASN][1000 genomes]
rs60866025	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60924938	0.91[EUR][1000 genomes]
rs61038961	0.84[EUR][1000 genomes]
rs61357987	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61492394	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980631	0.83[ASN][1000 genomes]
rs6981048	0.80[EUR][1000 genomes]
rs6985305	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6989783	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6990185	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6990672	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6998320	0.83[EUR][1000 genomes]
rs6999945	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7001192	0.83[EUR][1000 genomes]
rs7001442	0.83[EUR][1000 genomes]
rs7006472	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7009416	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7009487	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7010453	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7010977	0.83[ASN][1000 genomes]
rs7011003	0.83[ASN][1000 genomes]
rs7014758	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7016261	0.83[EUR][1000 genomes]
rs73237254	0.91[EUR][1000 genomes]
rs73237256	0.91[EUR][1000 genomes]
rs73237268	0.91[EUR][1000 genomes]
rs73237302	0.93[EUR][1000 genomes]
rs73247098	0.83[ASN][1000 genomes]
rs73248906	0.83[ASN][1000 genomes]
rs73248909	0.83[ASN][1000 genomes]
rs73248984	0.83[ASN][1000 genomes]
rs7463507	0.83[ASN][1000 genomes]
rs7813023	1.00[ASN][1000 genomes]
rs7814441	0.83[ASN][1000 genomes]
rs7815318	1.00[ASN][1000 genomes]
rs7815325	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833724	0.83[ASN][1000 genomes]
rs9298108	1.00[ASN][1000 genomes]
rs953177	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693171	0.83[EUR][1000 genomes]
rs9693187	0.83[EUR][1000 genomes]
rs9694791	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66890600-66896800	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:66892000-66896800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:66893800-66901800	Weak transcription	Spleen	Spleen
4	chr8:66894000-66897600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:66894800-66904000	Weak transcription	Primary T cells from cord blood	blood
6	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
7	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:66895200-66900200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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