Variant report

Variant	rs11994535
Chromosome Location	chr8:66836909-66836910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66832459..66835203-chr8:66835639..66837944,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11987232	0.83[ASN][1000 genomes]
rs11995869	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932394	1.00[JPT][hapmap]
rs16932396	1.00[JPT][hapmap]
rs16932422	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932441	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2357474	0.85[JPT][hapmap]
rs2357662	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs34178379	1.00[ASN][1000 genomes]
rs3922725	1.00[ASN][1000 genomes]
rs3922726	1.00[ASN][1000 genomes]
rs55636103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56200451	1.00[ASN][1000 genomes]
rs57033118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57896411	0.83[ASN][1000 genomes]
rs58122259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407124	1.00[ASN][1000 genomes]
rs58556742	0.89[ASN][1000 genomes]
rs58681615	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59321109	1.00[ASN][1000 genomes]
rs59342909	0.80[ASN][1000 genomes]
rs59436889	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59587921	0.80[ASN][1000 genomes]
rs60107801	0.80[ASN][1000 genomes]
rs60109751	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60866025	0.89[ASN][1000 genomes]
rs61492394	1.00[ASN][1000 genomes]
rs6980631	1.00[ASN][1000 genomes]
rs6999945	1.00[ASN][1000 genomes]
rs7001442	1.00[JPT][hapmap]
rs7005571	0.85[JPT][hapmap]
rs7006472	1.00[ASN][1000 genomes]
rs7010977	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011003	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014758	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73244828	0.80[ASN][1000 genomes]
rs73247098	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248906	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248909	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248984	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.83[ASN][1000 genomes]
rs7463507	1.00[ASN][1000 genomes]
rs7813023	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7814441	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815318	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7815325	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7821744	0.85[JPT][hapmap]
rs7824102	0.80[ASN][1000 genomes]
rs7833724	1.00[ASN][1000 genomes]
rs9298108	0.87[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs953177	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9694791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11994535	MYBL1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66828200-66840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:66835200-66837400	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:66835600-66838000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:66835800-66837400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:66835800-66839000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:66835800-66839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:66836000-66837400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:66836000-66838800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:66836200-66838800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:66836400-66837000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:66836400-66837000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr8:66836400-66837200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:66836600-66837200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:66836600-66837400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:66836600-66838000	Weak transcription	Primary T cells from cord blood	blood
16	chr8:66836600-66841600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:66836600-66841600	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links