Variant report

Variant	rs7824102
Chromosome Location	chr8:66797059-66797060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11994535	0.80[ASN][1000 genomes]
rs11995869	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs12114361	0.90[AFR][1000 genomes]
rs16932394	1.00[JPT][hapmap]
rs16932396	1.00[JPT][hapmap]
rs16932422	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs16932423	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932441	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2357474	0.85[JPT][hapmap]
rs2357662	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs34178379	0.80[ASN][1000 genomes]
rs3922725	0.80[ASN][1000 genomes]
rs3922726	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs55636103	0.80[ASN][1000 genomes]
rs56200451	0.80[ASN][1000 genomes]
rs56784317	0.94[AFR][1000 genomes]
rs57033118	0.80[ASN][1000 genomes]
rs57261641	0.88[AFR][1000 genomes]
rs57688867	0.96[AFR][1000 genomes]
rs57896411	1.00[EUR][1000 genomes]
rs58122259	0.80[ASN][1000 genomes]
rs58407124	0.80[ASN][1000 genomes]
rs58681615	0.80[ASN][1000 genomes]
rs59321109	0.80[ASN][1000 genomes]
rs59342909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59436889	0.80[ASN][1000 genomes]
rs59587921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60107801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60109751	0.80[ASN][1000 genomes]
rs61492394	0.80[ASN][1000 genomes]
rs61575731	0.89[AFR][1000 genomes]
rs6980631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6987499	0.88[AFR][1000 genomes]
rs6999945	0.80[ASN][1000 genomes]
rs7001442	1.00[JPT][hapmap]
rs7005571	0.93[ASW][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7006472	0.80[ASN][1000 genomes]
rs7010977	0.80[ASN][1000 genomes]
rs7011003	0.80[ASN][1000 genomes]
rs7014758	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs73244828	1.00[ASN][1000 genomes]
rs73247098	0.80[ASN][1000 genomes]
rs73248906	0.80[ASN][1000 genomes]
rs73248909	0.80[ASN][1000 genomes]
rs73248984	0.80[ASN][1000 genomes]
rs7463507	0.80[ASN][1000 genomes]
rs7463565	0.95[ASN][1000 genomes]
rs7813023	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7814441	0.80[ASN][1000 genomes]
rs7815318	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7815325	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7821744	0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7833724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7836663	0.96[AFR][1000 genomes]
rs9298108	1.00[JPT][hapmap]
rs953177	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs9694791	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66792400-66801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66794200-66799000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:66796400-66797200	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links