Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:66752979..66755042-chr8:66757030..66760922,3	MCF-7	breast:
2	chr8:66755086..66757057-chr8:66757170..66760034,2	MCF-7	breast:
3	chr8:66751463..66756785-chr8:66757093..66762344,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11995215	0.91[ASN][1000 genomes]
rs12114361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1355830	0.82[ASN][1000 genomes]
rs17396080	0.83[ASN][1000 genomes]
rs2357474	0.87[ASN][1000 genomes]
rs56784317	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57261641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57517571	0.95[ASN][1000 genomes]
rs57688867	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs58213885	0.95[ASN][1000 genomes]
rs58760509	0.95[ASN][1000 genomes]
rs59322796	0.95[ASN][1000 genomes]
rs59342909	0.89[AFR][1000 genomes]
rs59587921	0.89[AFR][1000 genomes]
rs60213300	0.95[ASN][1000 genomes]
rs61464990	0.95[ASN][1000 genomes]
rs61736485	0.95[ASN][1000 genomes]
rs6984768	1.00[ASN][1000 genomes]
rs6987499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73693418	0.95[ASN][1000 genomes]
rs73693420	0.95[ASN][1000 genomes]
rs7821744	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7824102	0.89[AFR][1000 genomes]
rs7833724	0.87[AFR][1000 genomes]
rs7836663	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7845030	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3479393	chr8:66759049-66760714	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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