Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66754650..66757052-chr8:66762979..66767192,3	MCF-7	breast:
2	chr8:66752149..66754541-chr8:66764690..66767016,4	K562	blood:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11995215	1.00[ASN][1000 genomes]
rs12114361	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1355830	0.82[ASN][1000 genomes]
rs17396080	0.83[ASN][1000 genomes]
rs2357474	0.87[ASN][1000 genomes]
rs3922726	0.82[AFR][1000 genomes]
rs57261641	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57517571	0.87[ASN][1000 genomes]
rs57688867	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58213885	0.87[ASN][1000 genomes]
rs58760509	0.87[ASN][1000 genomes]
rs59322796	0.87[ASN][1000 genomes]
rs59342909	0.94[AFR][1000 genomes]
rs59587921	0.94[AFR][1000 genomes]
rs60213300	0.87[ASN][1000 genomes]
rs61464990	0.87[ASN][1000 genomes]
rs61575731	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61736485	0.87[ASN][1000 genomes]
rs6980631	0.84[AFR][1000 genomes]
rs6984768	0.91[ASN][1000 genomes]
rs6987499	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7005571	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73693418	0.87[ASN][1000 genomes]
rs73693420	0.87[ASN][1000 genomes]
rs7821744	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7824102	0.94[AFR][1000 genomes]
rs7833724	0.92[AFR][1000 genomes]
rs7836663	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7845030	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv611456	chr8:66759626-66772558	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66761000-66766000	Weak transcription	GM12878-XiMat	blood
2	chr8:66761000-66767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:66761000-66769600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr8:66761200-66765800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:66763400-66766000	Weak transcription	Thymus	Thymus
6	chr8:66763800-66766000	Weak transcription	Primary B cells from cord blood	blood

Quick Search: