Variant report
| Variant | rs7836663 |
|---|---|
| Chromosome Location | chr8:66774481-66774482 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66751352..66757675-chr8:66773820..66778624,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272192 | Chromatin interaction |
| ENSG00000205268 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11995215 | 1.00[ASN][1000 genomes] |
| rs12114361 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1355830 | 0.82[ASN][1000 genomes] |
| rs17396080 | 0.83[ASN][1000 genomes] |
| rs2357474 | 0.87[ASN][1000 genomes] |
| rs3922726 | 0.82[AFR][1000 genomes] |
| rs56784317 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57261641 | 0.92[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57517571 | 0.87[ASN][1000 genomes] |
| rs57688867 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58213885 | 0.87[ASN][1000 genomes] |
| rs58760509 | 0.87[ASN][1000 genomes] |
| rs59322796 | 0.87[ASN][1000 genomes] |
| rs59342909 | 0.96[AFR][1000 genomes] |
| rs59587921 | 0.96[AFR][1000 genomes] |
| rs60213300 | 0.87[ASN][1000 genomes] |
| rs61464990 | 0.87[ASN][1000 genomes] |
| rs61575731 | 0.93[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61736485 | 0.87[ASN][1000 genomes] |
| rs6980631 | 0.86[AFR][1000 genomes] |
| rs6984768 | 0.91[ASN][1000 genomes] |
| rs6987499 | 0.92[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7005571 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73693418 | 0.87[ASN][1000 genomes] |
| rs73693420 | 0.87[ASN][1000 genomes] |
| rs7821744 | 0.91[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7824102 | 0.96[AFR][1000 genomes] |
| rs7833724 | 0.94[AFR][1000 genomes] |
| rs7845030 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66774400-66779400 | Weak transcription | Thymus | Thymus |
