Variant report

Variant	rs61464990
Chromosome Location	chr8:66707166-66707167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66705648..66708433-chr8:66714425..66716419,2	K562	blood:
2	chr8:66700732..66705237-chr8:66705292..66709207,8	K562	blood:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11995215	0.87[ASN][1000 genomes]
rs12114361	0.95[ASN][1000 genomes]
rs1355830	0.86[ASN][1000 genomes]
rs17396080	0.87[ASN][1000 genomes]
rs2357474	0.91[ASN][1000 genomes]
rs56784317	0.87[ASN][1000 genomes]
rs57261641	0.91[ASN][1000 genomes]
rs57517571	1.00[ASN][1000 genomes]
rs57688867	0.87[ASN][1000 genomes]
rs58213885	1.00[ASN][1000 genomes]
rs58760509	1.00[ASN][1000 genomes]
rs59322796	1.00[ASN][1000 genomes]
rs60213300	1.00[ASN][1000 genomes]
rs61575731	0.95[ASN][1000 genomes]
rs61736485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984768	0.95[ASN][1000 genomes]
rs6987499	0.95[ASN][1000 genomes]
rs7005571	0.95[ASN][1000 genomes]
rs73693418	1.00[ASN][1000 genomes]
rs73693420	1.00[ASN][1000 genomes]
rs7821744	0.95[ASN][1000 genomes]
rs7836663	0.87[ASN][1000 genomes]
rs7845030	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66689200-66707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:66693000-66708600	Weak transcription	NHDF-Ad	bronchial
3	chr8:66693600-66707400	Weak transcription	Placenta	Placenta
4	chr8:66693800-66707400	Weak transcription	Aorta	Aorta
5	chr8:66695600-66707800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:66701000-66708000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:66701000-66708000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr8:66701400-66708000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:66701600-66717000	Weak transcription	Gastric	stomach
10	chr8:66702400-66707200	Enhancers	Primary B cells from cord blood	blood
11	chr8:66702600-66707400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:66702600-66707400	Weak transcription	Fetal Thymus	thymus
13	chr8:66703200-66711800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:66703400-66707600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:66703800-66707600	Enhancers	Primary B cells from peripheral blood	blood
16	chr8:66703800-66711200	Weak transcription	Small Intestine	intestine
17	chr8:66703800-66711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:66704000-66707400	Weak transcription	Left Ventricle	heart
19	chr8:66704600-66707600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:66704600-66707600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr8:66704800-66707400	Weak transcription	Pancreas	Pancrea
22	chr8:66705000-66707400	Weak transcription	Right Atrium	heart
23	chr8:66705600-66707800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr8:66705800-66707200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:66705800-66707800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:66706000-66707200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:66706200-66707200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr8:66706200-66707400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:66706200-66711800	Weak transcription	K562	blood
30	chr8:66706400-66707200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:66706400-66707200	Enhancers	Colon Smooth Muscle	Colon
32	chr8:66706400-66708000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:66706600-66707200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:66706600-66707400	Weak transcription	Thymus	Thymus
35	chr8:66706800-66707200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:66706800-66707200	Flanking Active TSS	GM12878-XiMat	blood
37	chr8:66706800-66707400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:66706800-66707600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr8:66706800-66707800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr8:66706800-66708000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr8:66706800-66708000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr8:66706800-66708000	Enhancers	Dnd41	blood
43	chr8:66706800-66708000	Enhancers	NHEK	skin
44	chr8:66706800-66708200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr8:66706800-66708200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr8:66706800-66708200	Flanking Active TSS	HepG2	liver
47	chr8:66707000-66707200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr8:66707000-66707200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr8:66707000-66707400	Enhancers	Primary T cells from cord blood	blood
50	chr8:66707000-66707400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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