Variant report

Variant	rs73248909
Chromosome Location	chr8:66833041-66833042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66832459..66835203-chr8:66835639..66837944,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11987232	0.83[ASN][1000 genomes]
rs11994535	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995869	1.00[ASN][1000 genomes]
rs16932422	0.83[ASN][1000 genomes]
rs16932423	0.83[ASN][1000 genomes]
rs16932440	0.83[ASN][1000 genomes]
rs2357662	0.83[ASN][1000 genomes]
rs34178379	1.00[ASN][1000 genomes]
rs3922725	1.00[ASN][1000 genomes]
rs3922726	1.00[ASN][1000 genomes]
rs55636103	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56200451	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57033118	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57896411	0.83[ASN][1000 genomes]
rs58122259	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407124	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58556742	0.89[ASN][1000 genomes]
rs58681615	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59321109	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59342909	0.80[ASN][1000 genomes]
rs59436889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59587921	0.80[ASN][1000 genomes]
rs60107801	0.80[ASN][1000 genomes]
rs60109751	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60866025	0.89[ASN][1000 genomes]
rs61492394	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6980631	1.00[ASN][1000 genomes]
rs6999945	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7006472	1.00[ASN][1000 genomes]
rs7010977	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011003	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014758	1.00[ASN][1000 genomes]
rs73244828	0.80[ASN][1000 genomes]
rs73247098	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248984	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.83[ASN][1000 genomes]
rs7463507	1.00[ASN][1000 genomes]
rs7813023	0.83[ASN][1000 genomes]
rs7814441	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815318	0.83[ASN][1000 genomes]
rs7815325	0.83[ASN][1000 genomes]
rs7824102	0.80[ASN][1000 genomes]
rs7833724	1.00[ASN][1000 genomes]
rs9298108	0.83[ASN][1000 genomes]
rs953177	0.83[ASN][1000 genomes]
rs9694791	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66828200-66840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:66833000-66833800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:66833000-66834000	Enhancers	Primary T helper cells PMA-I stimulated	--

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