Variant report

Variant	rs9298108
Chromosome Location	chr8:66955837-66955838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11987232	1.00[ASN][1000 genomes]
rs11994535	0.83[ASN][1000 genomes]
rs11995869	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932394	1.00[JPT][hapmap]
rs16932396	1.00[JPT][hapmap]
rs16932422	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932423	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932440	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932441	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2357662	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34178379	0.83[ASN][1000 genomes]
rs3922725	0.83[ASN][1000 genomes]
rs3922726	0.83[ASN][1000 genomes]
rs55636103	0.83[ASN][1000 genomes]
rs56200451	0.83[ASN][1000 genomes]
rs57033118	0.83[ASN][1000 genomes]
rs57896411	1.00[ASN][1000 genomes]
rs58122259	0.83[ASN][1000 genomes]
rs58165070	0.94[ASN][1000 genomes]
rs58407124	0.83[ASN][1000 genomes]
rs58556742	0.84[ASN][1000 genomes]
rs58681615	0.83[ASN][1000 genomes]
rs59321109	0.83[ASN][1000 genomes]
rs59436889	0.83[ASN][1000 genomes]
rs59514911	0.87[EUR][1000 genomes]
rs60109751	0.83[ASN][1000 genomes]
rs60866025	0.84[ASN][1000 genomes]
rs61492394	0.83[ASN][1000 genomes]
rs6980631	0.83[ASN][1000 genomes]
rs6999945	0.83[ASN][1000 genomes]
rs7001442	1.00[JPT][hapmap]
rs7006472	0.83[ASN][1000 genomes]
rs7010977	0.83[ASN][1000 genomes]
rs7011003	0.83[ASN][1000 genomes]
rs7014758	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73247098	0.83[ASN][1000 genomes]
rs73248906	0.83[ASN][1000 genomes]
rs73248909	0.83[ASN][1000 genomes]
rs73248984	0.83[ASN][1000 genomes]
rs73252340	1.00[ASN][1000 genomes]
rs7463507	0.83[ASN][1000 genomes]
rs7813023	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7814441	0.83[ASN][1000 genomes]
rs7815318	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7815325	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7833724	0.83[ASN][1000 genomes]
rs953177	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9694791	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66950400-66958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:66954600-66960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:66954800-66957000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:66954800-66958000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:66955400-66956000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr8:66955600-66956000	Enhancers	Fetal Muscle Leg	muscle
8	chr8:66955600-66956000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr8:66955800-66956400	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links