Variant report

Variant	rs16932441
Chromosome Location	chr8:66957880-66957881
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11987232	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11995869	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16932391	0.89[EUR][1000 genomes]
rs16932394	1.00[JPT][hapmap]
rs16932396	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs16932422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16932423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16932424	0.83[EUR][1000 genomes]
rs16932440	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2357662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4636189	1.00[EUR][1000 genomes]
rs57633306	0.83[EUR][1000 genomes]
rs57896411	0.90[ASN][1000 genomes]
rs58165070	0.85[ASN][1000 genomes]
rs61038961	0.87[EUR][1000 genomes]
rs6985305	0.85[EUR][1000 genomes]
rs6990185	0.85[EUR][1000 genomes]
rs6990672	0.85[EUR][1000 genomes]
rs6998320	0.89[EUR][1000 genomes]
rs7001192	0.89[EUR][1000 genomes]
rs7001442	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7010453	0.85[EUR][1000 genomes]
rs7014758	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7016261	0.89[EUR][1000 genomes]
rs7017603	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs73252340	0.90[ASN][1000 genomes]
rs7813023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7815318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7815325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9298108	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs953177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9693171	0.89[EUR][1000 genomes]
rs9693187	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66950400-66958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:66954600-66960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:66954800-66958000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:66956000-66960400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:66956400-66960000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:66956400-66960400	Weak transcription	Psoas Muscle	Psoas
8	chr8:66956800-66958000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:66957400-66958600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:66957800-66959600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:66957800-66960200	Enhancers	Placenta	Placenta

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