Variant report

Variant	rs57633306
Chromosome Location	chr8:66919022-66919023
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66917887..66919712-chr8:66932968..66934501,2	MCF-7	breast:
2	chr8:66918473..66922547-chr8:66931459..66935939,5	MCF-7	breast:
3	chr8:66916676..66919243-chr8:66940181..66941759,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147570	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11987232	0.83[EUR][1000 genomes]
rs16932389	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932391	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932394	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932396	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932422	0.82[EUR][1000 genomes]
rs16932423	0.82[EUR][1000 genomes]
rs16932424	0.84[EUR][1000 genomes]
rs16932440	0.83[EUR][1000 genomes]
rs16932441	0.83[EUR][1000 genomes]
rs28558271	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28671004	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4636189	0.83[EUR][1000 genomes]
rs58423697	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58556742	0.80[EUR][1000 genomes]
rs59514911	0.96[ASN][1000 genomes]
rs60866025	0.80[EUR][1000 genomes]
rs60924938	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61038961	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61357987	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985305	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6989783	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6990185	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6990672	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6998320	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7001192	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7001442	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009416	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009487	0.96[ASN][1000 genomes]
rs7010453	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7016261	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73237254	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73237256	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73237268	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73237302	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73252340	0.84[EUR][1000 genomes]
rs7813023	0.83[EUR][1000 genomes]
rs7815318	0.81[EUR][1000 genomes]
rs7815325	0.80[EUR][1000 genomes]
rs953177	0.80[EUR][1000 genomes]
rs9693171	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9693187	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2390159	chr8:66919020-66919022	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66914600-66922200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:66914800-66922400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:66915200-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:66915400-66920800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:66915400-66922200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:66915400-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
8	chr8:66916800-66923400	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:66918200-66920600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr8:66918200-66921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr8:66918400-66919400	Enhancers	Primary B cells from cord blood	blood
12	chr8:66918400-66921200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:66918400-66921800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:66918600-66921400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:66918600-66922000	Weak transcription	Primary T cells from cord blood	blood
16	chr8:66918800-66919200	Enhancers	GM12878-XiMat	blood
17	chr8:66918800-66922000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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