Variant report

Variant	rs58556742
Chromosome Location	chr8:66871712-66871713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66870923..66873471-chr8:66879093..66881602,2	K562	blood:
2	chr8:66868207..66870344-chr8:66870495..66872136,2	MCF-7	breast:
3	chr8:66861232..66863440-chr8:66868991..66871927,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11987232	0.84[ASN][1000 genomes]
rs11994535	0.89[ASN][1000 genomes]
rs11995869	0.89[ASN][1000 genomes]
rs16932389	0.83[EUR][1000 genomes]
rs16932394	0.83[EUR][1000 genomes]
rs16932422	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932423	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932440	0.84[ASN][1000 genomes]
rs2357662	0.84[ASN][1000 genomes]
rs28671004	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34178379	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3922725	0.89[ASN][1000 genomes]
rs3922726	0.89[ASN][1000 genomes]
rs3923558	0.85[EUR][1000 genomes]
rs55636103	0.89[ASN][1000 genomes]
rs56200451	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57033118	0.89[ASN][1000 genomes]
rs57633306	0.80[EUR][1000 genomes]
rs57896411	0.84[ASN][1000 genomes]
rs58122259	0.89[ASN][1000 genomes]
rs58407124	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58423697	0.83[EUR][1000 genomes]
rs58607438	0.80[EUR][1000 genomes]
rs58681615	0.89[ASN][1000 genomes]
rs59321109	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59436889	0.89[ASN][1000 genomes]
rs60109751	0.89[ASN][1000 genomes]
rs60866025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60924938	0.83[EUR][1000 genomes]
rs61038961	0.80[EUR][1000 genomes]
rs61357987	0.83[EUR][1000 genomes]
rs61492394	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980631	0.89[ASN][1000 genomes]
rs6981048	0.89[EUR][1000 genomes]
rs6985305	0.83[EUR][1000 genomes]
rs6989783	0.85[EUR][1000 genomes]
rs6990185	0.83[EUR][1000 genomes]
rs6990672	0.83[EUR][1000 genomes]
rs6999945	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006472	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7009416	0.83[EUR][1000 genomes]
rs7010453	0.83[EUR][1000 genomes]
rs7010977	0.89[ASN][1000 genomes]
rs7011003	0.89[ASN][1000 genomes]
rs7014758	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73237254	0.83[EUR][1000 genomes]
rs73237256	0.83[EUR][1000 genomes]
rs73237268	0.83[EUR][1000 genomes]
rs73237302	0.85[EUR][1000 genomes]
rs73247098	0.89[ASN][1000 genomes]
rs73248906	0.89[ASN][1000 genomes]
rs73248909	0.89[ASN][1000 genomes]
rs73248984	0.89[ASN][1000 genomes]
rs73252340	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7463507	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7463565	0.87[EUR][1000 genomes]
rs7813023	0.84[ASN][1000 genomes]
rs7814441	0.89[ASN][1000 genomes]
rs7815318	0.84[ASN][1000 genomes]
rs7815325	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827556	0.85[EUR][1000 genomes]
rs7833724	0.89[ASN][1000 genomes]
rs9298108	0.84[ASN][1000 genomes]
rs953177	0.84[ASN][1000 genomes]
rs9694791	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66864000-66871800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:66864200-66873400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:66864400-66876200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:66864600-66872000	Weak transcription	NHEK	skin
5	chr8:66864600-66872200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:66865200-66874400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr8:66867200-66871800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:66867600-66872000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:66867600-66872000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:66867600-66872400	Weak transcription	Spleen	Spleen
11	chr8:66868200-66876000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:66868400-66872200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:66868600-66871800	Weak transcription	GM12878-XiMat	blood
14	chr8:66868600-66874400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr8:66868800-66873800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:66868800-66874200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:66869200-66872000	Weak transcription	Thymus	Thymus
18	chr8:66869200-66872200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:66869200-66874000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:66869400-66871800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr8:66869400-66871800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:66869400-66872000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:66869400-66872000	Weak transcription	Fetal Thymus	thymus
24	chr8:66869400-66872200	Weak transcription	Primary B cells from cord blood	blood
25	chr8:66869400-66875000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr8:66869600-66871800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:66870400-66871800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:66870400-66872000	Weak transcription	Primary T cells from cord blood	blood
29	chr8:66870400-66873600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr8:66870600-66871800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr8:66871400-66875800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr8:66871600-66872200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:66871600-66873000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr8:66871600-66873000	Enhancers	Esophagus	oesophagus
35	chr8:66871600-66873000	Enhancers	Small Intestine	intestine
36	chr8:66871600-66873600	Enhancers	Dnd41	blood
37	chr8:66871600-66873800	Enhancers	NHDF-Ad	bronchial
38	chr8:66871600-66874200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr8:66871600-66874400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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