Variant report

Variant	rs7827556
Chromosome Location	chr8:66860819-66860820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66844282..66846340-chr8:66858870..66861853,2	MCF-7	breast:
2	chr8:66859588..66861651-chr8:66920158..66921660,2	MCF-7	breast:
3	chr8:66752670..66756461-chr8:66859172..66862943,6	MCF-7	breast:
4	chr8:66752944..66756323-chr8:66859318..66861512,4	MCF-7	breast:
5	chr8:66856434..66858686-chr8:66859237..66860860,2	MCF-7	breast:
6	chr8:66825244..66825754-chr8:66860689..66861569,2	MCF-7	breast:
7	chr8:66860378..66862946-chr8:66940064..66944249,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16932394	0.87[CEU][hapmap]
rs16932415	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs16932422	1.00[CEU][hapmap]
rs16932423	1.00[CEU][hapmap]
rs16932424	1.00[CEU][hapmap]
rs16932436	1.00[CEU][hapmap]
rs16932440	1.00[CEU][hapmap]
rs34178379	0.84[EUR][1000 genomes]
rs3923558	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4636189	1.00[CEU][hapmap]
rs55990851	0.83[EUR][1000 genomes]
rs58407124	0.82[EUR][1000 genomes]
rs58556742	0.85[EUR][1000 genomes]
rs58607438	0.85[EUR][1000 genomes]
rs59321109	0.82[EUR][1000 genomes]
rs60866025	0.85[EUR][1000 genomes]
rs6981048	0.95[EUR][1000 genomes]
rs6999945	0.82[EUR][1000 genomes]
rs7001442	0.87[CEU][hapmap]
rs7006472	0.84[EUR][1000 genomes]
rs7014758	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7017603	1.00[CEU][hapmap]
rs7813023	1.00[CEU][hapmap]
rs7815318	1.00[CEU][hapmap]
rs7815325	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs953177	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66851400-66862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:66854000-66861000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:66854000-66863400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:66854000-66863600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:66854000-66863600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:66854200-66863200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr8:66854400-66863400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:66855000-66861200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:66855400-66863200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:66855400-66863400	Enhancers	Primary B cells from peripheral blood	blood
11	chr8:66855600-66863200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:66855600-66863400	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:66855600-66863400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:66856800-66863600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:66857400-66863600	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:66858800-66863000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:66859400-66861200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:66859400-66861200	Enhancers	HMEC	breast
19	chr8:66859600-66861000	Enhancers	NHEK	skin
20	chr8:66859600-66864600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:66859600-66865200	Flanking Active TSS	Dnd41	blood
22	chr8:66859800-66863800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr8:66860000-66861000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr8:66860000-66861000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:66860000-66861800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:66860200-66861000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:66860200-66861400	Enhancers	Esophagus	oesophagus
28	chr8:66860200-66861400	Enhancers	Fetal Muscle Leg	muscle
29	chr8:66860200-66861800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr8:66860200-66862000	Enhancers	Duodenum Mucosa	Duodenum
31	chr8:66860200-66865200	Flanking Active TSS	GM12878-XiMat	blood
32	chr8:66860400-66861000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr8:66860400-66861000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr8:66860400-66861400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr8:66860400-66861600	Enhancers	Placenta	Placenta
36	chr8:66860400-66861800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr8:66860400-66862200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:66860600-66861000	Enhancers	Hela-S3	cervix
39	chr8:66860600-66861200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr8:66860600-66861200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:66860600-66862000	Flanking Active TSS	Thymus	Thymus
42	chr8:66860600-66863400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr8:66860800-66861000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr8:66860800-66861000	ZNF genes & repeats	Pancreas	Pancrea
45	chr8:66860800-66861200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:66860800-66861200	Enhancers	Adipose Nuclei	Adipose
47	chr8:66860800-66861200	Enhancers	Fetal Muscle Trunk	muscle
48	chr8:66860800-66861200	Enhancers	Psoas Muscle	Psoas
49	chr8:66860800-66861200	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr8:66860800-66861400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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