Variant report

Variant	rs58607438
Chromosome Location	chr8:66835277-66835278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs34178379	0.89[EUR][1000 genomes]
rs3923558	0.95[EUR][1000 genomes]
rs55990851	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56200451	0.91[EUR][1000 genomes]
rs58407124	0.87[EUR][1000 genomes]
rs58556742	0.80[EUR][1000 genomes]
rs59321109	0.87[EUR][1000 genomes]
rs60866025	0.80[EUR][1000 genomes]
rs61492394	0.91[EUR][1000 genomes]
rs6981048	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6999945	0.87[EUR][1000 genomes]
rs7006472	0.89[EUR][1000 genomes]
rs7014758	0.89[EUR][1000 genomes]
rs7463507	0.93[EUR][1000 genomes]
rs7463565	0.93[EUR][1000 genomes]
rs7815325	0.80[EUR][1000 genomes]
rs7827556	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66828200-66840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:66833400-66836400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:66833600-66836000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:66833800-66835600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:66833800-66835600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:66833800-66835800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr8:66834000-66835800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:66834200-66835800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:66834600-66835800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:66835200-66837400	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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