Variant report

Variant	rs55990851
Chromosome Location	chr8:66790130-66790131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34178379	0.86[EUR][1000 genomes]
rs3923558	0.93[EUR][1000 genomes]
rs56200451	0.89[EUR][1000 genomes]
rs58407124	0.84[EUR][1000 genomes]
rs58607438	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59321109	0.84[EUR][1000 genomes]
rs61492394	0.89[EUR][1000 genomes]
rs6981048	0.88[EUR][1000 genomes]
rs6999945	0.84[EUR][1000 genomes]
rs7006472	0.86[EUR][1000 genomes]
rs7014758	0.86[EUR][1000 genomes]
rs7463507	0.91[EUR][1000 genomes]
rs7463565	0.91[EUR][1000 genomes]
rs7827556	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66785200-66790800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:66787600-66790600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:66787600-66795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:66789600-66790600	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:66789800-66790200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:66789800-66790600	Enhancers	Primary B cells from cord blood	blood
7	chr8:66789800-66790600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:66789800-66790600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:66789800-66791200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:66789800-66791800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:66790000-66790200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:66790000-66790200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
13	chr8:66790000-66790200	Flanking Active TSS	GM12878-XiMat	blood
14	chr8:66790000-66791200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:66790000-66791600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:66790000-66792000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr8:66790000-66792400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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