Variant report

Variant	rs3923558
Chromosome Location	chr8:66857162-66857163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66856434..66858686-chr8:66859237..66860860,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16932415	0.81[EUR][1000 genomes]
rs34178379	0.93[EUR][1000 genomes]
rs55990851	0.93[EUR][1000 genomes]
rs56200451	0.87[EUR][1000 genomes]
rs58407124	0.91[EUR][1000 genomes]
rs58556742	0.85[EUR][1000 genomes]
rs58607438	0.95[EUR][1000 genomes]
rs59321109	0.91[EUR][1000 genomes]
rs60866025	0.85[EUR][1000 genomes]
rs61492394	0.87[EUR][1000 genomes]
rs6981048	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6999945	0.91[EUR][1000 genomes]
rs7006472	0.93[EUR][1000 genomes]
rs7014758	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7463507	0.89[EUR][1000 genomes]
rs7463565	0.89[EUR][1000 genomes]
rs7815325	0.85[EUR][1000 genomes]
rs7827556	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66851400-66858200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:66851400-66862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:66853000-66858400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr8:66853400-66860800	Weak transcription	Pancreas	Pancrea
5	chr8:66854000-66861000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr8:66854000-66863400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:66854000-66863600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:66854000-66863600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:66854200-66860200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr8:66854200-66860800	Enhancers	Primary T cells from cord blood	blood
11	chr8:66854200-66860800	Enhancers	Fetal Thymus	thymus
12	chr8:66854200-66863200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:66854400-66857400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:66854400-66858800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:66854400-66863400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:66854600-66860400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:66854800-66857200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:66854800-66860000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:66855000-66861200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:66855200-66858000	Enhancers	Thymus	Thymus
21	chr8:66855400-66857200	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:66855400-66857200	Enhancers	Brain Substantia Nigra	brain
23	chr8:66855400-66857400	Enhancers	Brain Hippocampus Middle	brain
24	chr8:66855400-66863200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:66855400-66863400	Enhancers	Primary B cells from peripheral blood	blood
26	chr8:66855600-66857200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr8:66855600-66863200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:66855600-66863400	Enhancers	Primary hematopoietic stem cells	blood
29	chr8:66855600-66863400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr8:66855800-66859600	Weak transcription	Hela-S3	cervix
31	chr8:66855800-66860800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr8:66856000-66857600	Enhancers	Primary B cells from cord blood	blood
33	chr8:66856400-66857400	Flanking Active TSS	GM12878-XiMat	blood
34	chr8:66856400-66859400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:66856400-66859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:66856600-66858200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:66856600-66859600	Weak transcription	NHEK	skin
38	chr8:66856600-66860000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr8:66856600-66860600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:66856800-66857200	Weak transcription	HMEC	breast
41	chr8:66856800-66863600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr8:66857000-66857400	Flanking Active TSS	Dnd41	blood
43	chr8:66857000-66858200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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