Variant report

Variant	rs7463565
Chromosome Location	chr8:66816566-66816567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11995869	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs16932394	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs16932396	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16932415	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs16932422	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16932423	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16932424	0.87[CEU][hapmap]
rs16932436	0.87[CEU][hapmap]
rs16932440	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs16932441	1.00[JPT][hapmap]
rs2357474	0.85[JPT][hapmap]
rs2357662	1.00[JPT][hapmap]
rs34178379	0.95[EUR][1000 genomes]
rs3923558	0.89[EUR][1000 genomes]
rs4636189	0.87[CEU][hapmap]
rs55990851	0.91[EUR][1000 genomes]
rs56200451	0.98[EUR][1000 genomes]
rs58407124	0.93[EUR][1000 genomes]
rs58556742	0.87[EUR][1000 genomes]
rs58607438	0.93[EUR][1000 genomes]
rs59321109	0.93[EUR][1000 genomes]
rs59342909	0.95[ASN][1000 genomes]
rs59587921	0.95[ASN][1000 genomes]
rs60107801	0.95[ASN][1000 genomes]
rs60866025	0.87[EUR][1000 genomes]
rs61492394	0.98[EUR][1000 genomes]
rs6981048	0.84[EUR][1000 genomes]
rs6989783	0.80[EUR][1000 genomes]
rs6999945	0.93[EUR][1000 genomes]
rs7001442	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7005571	0.85[JPT][hapmap]
rs7006472	0.95[EUR][1000 genomes]
rs7014758	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs73244828	0.95[ASN][1000 genomes]
rs7463507	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813023	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7815318	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7815325	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7821744	0.85[JPT][hapmap]
rs7824102	0.95[ASN][1000 genomes]
rs7827556	0.87[CEU][hapmap]
rs9298108	1.00[JPT][hapmap]
rs953177	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66816200-66816800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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