Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66748839..66751430-chr8:66926804..66929001,2	K562	blood:
2	chr8:66927752..66929914-chr8:66933298..66935729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000147570	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16932389	0.93[EUR][1000 genomes]
rs16932394	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs16932396	1.00[CEU][hapmap]
rs16932422	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs16932423	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs16932424	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs16932436	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs16932440	0.87[CEU][hapmap]
rs17398569	1.00[CHB][hapmap]
rs17398736	1.00[CHB][hapmap]
rs28671004	0.85[EUR][1000 genomes]
rs3923558	0.81[EUR][1000 genomes]
rs4636189	0.87[CEU][hapmap]
rs58423697	0.93[EUR][1000 genomes]
rs60924938	0.93[EUR][1000 genomes]
rs61357987	0.93[EUR][1000 genomes]
rs6981048	0.86[EUR][1000 genomes]
rs6989783	0.91[EUR][1000 genomes]
rs7001442	1.00[CEU][hapmap]
rs7009416	0.93[EUR][1000 genomes]
rs7009487	0.81[EUR][1000 genomes]
rs7014758	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs73237254	0.93[EUR][1000 genomes]
rs73237256	0.93[EUR][1000 genomes]
rs73237268	0.93[EUR][1000 genomes]
rs73237302	0.91[EUR][1000 genomes]
rs73252340	0.85[EUR][1000 genomes]
rs7813023	0.87[CEU][hapmap]
rs7815318	0.87[CEU][hapmap]
rs7815325	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs7827556	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs953177	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
2	chr8:66922800-66933000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:66923000-66930600	Weak transcription	Fetal Thymus	thymus
4	chr8:66923200-66931200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:66923200-66934400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:66923200-66934600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:66926200-66928400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr8:66926200-66928400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:66926600-66928400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:66926800-66928800	Flanking Active TSS	GM12878-XiMat	blood
11	chr8:66927000-66928200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr8:66927800-66928200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:66927800-66928400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr8:66928000-66931200	Weak transcription	Primary T cells from cord blood	blood
15	chr8:66928000-66931200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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