Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:66949252..66949997-chr8:67333809..67334625,2	MCF-7	breast:
2	chr8:66949056..66952005-chr8:67340910..67342577,2	MCF-7	breast:
3	chr8:66946238..66950362-chr8:67025196..67028717,4	MCF-7	breast:
4	chr8:66947582..66951459-chr8:67339934..67342685,5	MCF-7	breast:
5	chr8:66948770..66951208-chr8:67340566..67342252,3	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11987232	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932391	0.89[EUR][1000 genomes]
rs16932394	0.87[CEU][hapmap]
rs16932396	0.89[EUR][1000 genomes]
rs16932415	0.87[CEU][hapmap]
rs16932422	1.00[CEU][hapmap]
rs16932423	1.00[CEU][hapmap]
rs16932424	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16932436	1.00[CEU][hapmap]
rs16932440	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932441	1.00[EUR][1000 genomes]
rs57633306	0.83[EUR][1000 genomes]
rs61038961	0.87[EUR][1000 genomes]
rs6985305	0.85[EUR][1000 genomes]
rs6990185	0.85[EUR][1000 genomes]
rs6990672	0.85[EUR][1000 genomes]
rs6998320	0.89[EUR][1000 genomes]
rs7001192	0.89[EUR][1000 genomes]
rs7001442	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs7010453	0.85[EUR][1000 genomes]
rs7014758	0.87[CEU][hapmap]
rs7016261	0.89[EUR][1000 genomes]
rs7017603	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7813023	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7815318	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7815325	0.87[CEU][hapmap]
rs7827556	1.00[CEU][hapmap]
rs953177	1.00[CEU][hapmap]
rs9693171	0.89[EUR][1000 genomes]
rs9693187	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66939600-66952800	Weak transcription	Psoas Muscle	Psoas
2	chr8:66945600-66951200	Weak transcription	Pancreas	Pancrea
3	chr8:66946000-66951000	Weak transcription	Stomach Mucosa	stomach
4	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:66946600-66953800	Weak transcription	NHDF-Ad	bronchial
6	chr8:66946600-66954000	Weak transcription	HMEC	breast
7	chr8:66947000-66954000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:66948000-66951400	Enhancers	A549	lung
9	chr8:66948800-66954000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:66948800-66954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:66949000-66950400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:66949400-66953400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:66949400-66954000	Weak transcription	GM12878-XiMat	blood
14	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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