Variant report

Variant	rs73237254
Chromosome Location	chr8:66914383-66914384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66914244..66914789-chr8:66944445..66945132,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16932389	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932391	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932394	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932396	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932415	0.93[EUR][1000 genomes]
rs16932422	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16932423	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28558271	0.93[ASN][1000 genomes]
rs28671004	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34178379	0.82[EUR][1000 genomes]
rs57633306	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58407124	0.80[EUR][1000 genomes]
rs58423697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58556742	0.83[EUR][1000 genomes]
rs59321109	0.80[EUR][1000 genomes]
rs59514911	1.00[ASN][1000 genomes]
rs60866025	0.83[EUR][1000 genomes]
rs60924938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61038961	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989783	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990185	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998320	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999945	0.80[EUR][1000 genomes]
rs7001192	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001442	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006472	0.82[EUR][1000 genomes]
rs7009416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009487	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010453	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014758	0.82[EUR][1000 genomes]
rs7016261	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237302	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.91[EUR][1000 genomes]
rs7815325	0.83[EUR][1000 genomes]
rs953177	0.91[EUR][1000 genomes]
rs9693171	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693187	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr8:66910200-66914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:66910200-66915200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:66910200-66915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr8:66910200-66917800	Enhancers	Primary T cells from cord blood	blood
9	chr8:66911800-66917200	Weak transcription	Small Intestine	intestine
10	chr8:66912000-66917000	Weak transcription	Fetal Intestine Large	intestine
11	chr8:66912000-66917000	Weak transcription	Fetal Intestine Small	intestine
12	chr8:66912000-66918400	Weak transcription	Primary B cells from cord blood	blood
13	chr8:66912600-66915400	Enhancers	Fetal Thymus	thymus
14	chr8:66912800-66914600	Enhancers	Thymus	Thymus
15	chr8:66912800-66915600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:66913000-66914600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr8:66913000-66914600	Enhancers	Dnd41	blood
18	chr8:66913200-66914800	Enhancers	Primary hematopoietic stem cells	blood
19	chr8:66913800-66914600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:66913800-66914600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:66913800-66915800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr8:66914000-66914400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:66914000-66914400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:66914000-66914400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr8:66914000-66914400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr8:66914000-66914600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:66914200-66914400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr8:66914200-66914400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:66914200-66914400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:66914200-66914600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr8:66914200-66914600	Enhancers	Pancreas	Pancrea

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