Variant report

Variant	rs58681615
Chromosome Location	chr8:66840969-66840970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66836978..66839571-chr8:66839813..66842033,2	K562	blood:
2	chr8:66839117..66841640-chr8:66852102..66854961,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11987232	0.83[ASN][1000 genomes]
rs11994535	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995869	1.00[ASN][1000 genomes]
rs16932422	0.83[ASN][1000 genomes]
rs16932423	0.83[ASN][1000 genomes]
rs16932440	0.83[ASN][1000 genomes]
rs2357662	0.83[ASN][1000 genomes]
rs34178379	1.00[ASN][1000 genomes]
rs3922725	1.00[ASN][1000 genomes]
rs3922726	1.00[ASN][1000 genomes]
rs55636103	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56200451	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57033118	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57896411	0.83[ASN][1000 genomes]
rs58122259	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407124	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58556742	0.89[ASN][1000 genomes]
rs59321109	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59342909	0.80[ASN][1000 genomes]
rs59436889	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59587921	0.80[ASN][1000 genomes]
rs60107801	0.80[ASN][1000 genomes]
rs60109751	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60866025	0.89[ASN][1000 genomes]
rs61492394	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6980631	1.00[ASN][1000 genomes]
rs6999945	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7006472	1.00[ASN][1000 genomes]
rs7010977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011003	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014758	1.00[ASN][1000 genomes]
rs73244828	0.80[ASN][1000 genomes]
rs73247098	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248906	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248909	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248984	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252340	0.83[ASN][1000 genomes]
rs7463507	1.00[ASN][1000 genomes]
rs7813023	0.83[ASN][1000 genomes]
rs7814441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815318	0.83[ASN][1000 genomes]
rs7815325	0.83[ASN][1000 genomes]
rs7824102	0.80[ASN][1000 genomes]
rs7833724	1.00[ASN][1000 genomes]
rs9298108	0.83[ASN][1000 genomes]
rs953177	0.83[ASN][1000 genomes]
rs9694791	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66836600-66841600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:66836600-66841600	Weak transcription	Fetal Thymus	thymus
3	chr8:66837400-66842200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:66838000-66841600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:66838200-66841600	Weak transcription	Thymus	Thymus
6	chr8:66838600-66841000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr8:66838800-66841200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:66838800-66841400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:66838800-66842000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr8:66838800-66842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:66839000-66841200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:66839000-66841600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:66839800-66841800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr8:66839800-66841800	Enhancers	Brain Hippocampus Middle	brain
15	chr8:66840000-66841000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr8:66840000-66841800	Enhancers	Brain Anterior Caudate	brain
17	chr8:66840000-66842200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:66840000-66846800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:66840200-66841600	Enhancers	Brain Angular Gyrus	brain
20	chr8:66840200-66846600	Enhancers	HMEC	breast
21	chr8:66840400-66842000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr8:66840600-66842000	Enhancers	Brain Cingulate Gyrus	brain
23	chr8:66840600-66842000	Enhancers	Brain Substantia Nigra	brain
24	chr8:66840600-66842800	Enhancers	Dnd41	blood
25	chr8:66840600-66843200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:66840800-66841000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr8:66840800-66841200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr8:66840800-66842400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:66840800-66842400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:66840800-66842400	Enhancers	HepG2	liver

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