Variant report

Variant	rs17396192
Chromosome Location	chr8:66679583-66679584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11995869	0.89[CEU][hapmap]
rs16932315	0.87[GIH][hapmap]
rs17304488	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17304551	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17304921	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17394029	0.85[AMR][1000 genomes]
rs17394294	0.85[AMR][1000 genomes]
rs17395190	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17395394	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17395656	0.87[GIH][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17395816	0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs17395851	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17395878	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17395920	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17396004	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17396066	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35688380	0.89[CEU][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3935203	0.89[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4392943	0.85[AMR][1000 genomes]
rs4515591	0.85[AMR][1000 genomes]
rs58213885	0.81[EUR][1000 genomes]
rs6996048	0.89[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7001138	0.89[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17396192	MTFR1	cis	parietal	SCAN
rs17396192	LIPG	trans	lymphoblastoid	seeQTL
rs17396192	MTFR1	cis	cerebellum	SCAN
rs17396192	GGH	cis	parietal	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66645600-66686000	Weak transcription	HSMM	muscle
2	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:66651600-66690200	Weak transcription	NH-A	brain
6	chr8:66654600-66690200	Weak transcription	Lung	lung
7	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
8	chr8:66657000-66685000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:66658600-66686000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:66660400-66681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:66662800-66690200	Weak transcription	HepG2	liver
14	chr8:66665400-66687800	Strong transcription	Fetal Thymus	thymus
15	chr8:66667400-66687800	Strong transcription	Dnd41	blood
16	chr8:66668200-66682600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:66668200-66686200	Weak transcription	Liver	Liver
18	chr8:66668400-66680000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:66668600-66685600	Weak transcription	Adipose Nuclei	Adipose
20	chr8:66669000-66679800	Weak transcription	Spleen	Spleen
21	chr8:66669400-66687800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:66670800-66687400	Weak transcription	Brain Germinal Matrix	brain
23	chr8:66671200-66681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:66671400-66687200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:66671400-66687800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:66671400-66690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:66671600-66679600	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:66671600-66679800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:66671800-66679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:66671800-66679800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:66671800-66679800	Weak transcription	Fetal Intestine Small	intestine
32	chr8:66671800-66679800	Weak transcription	Fetal Stomach	stomach
33	chr8:66671800-66687000	Weak transcription	Fetal Brain Female	brain
34	chr8:66671800-66687800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:66671800-66689800	Weak transcription	K562	blood
36	chr8:66671800-66690200	Weak transcription	Gastric	stomach
37	chr8:66672000-66686200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:66672400-66679800	Weak transcription	Left Ventricle	heart
39	chr8:66672800-66680400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr8:66674000-66687000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:66674200-66680200	Weak transcription	Fetal Kidney	kidney
42	chr8:66674200-66684600	Weak transcription	NHDF-Ad	bronchial
43	chr8:66674200-66687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:66674200-66687800	Weak transcription	Aorta	Aorta
45	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
46	chr8:66674600-66679800	Weak transcription	Psoas Muscle	Psoas
47	chr8:66674600-66682600	Weak transcription	Hela-S3	cervix
48	chr8:66674600-66687000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:66674600-66687200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:66674600-66690000	Weak transcription	Rectal Smooth Muscle	rectum

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