Variant report

Variant	rs17304921
Chromosome Location	chr8:66655410-66655411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16932315	1.00[GIH][hapmap];0.86[TSI][hapmap]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17304551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395394	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395816	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17396004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17396066	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17396192	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3935203	1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4392943	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996048	1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7001138	1.00[MEX][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
5	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
6	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr8:66628400-66666600	Strong transcription	Dnd41	blood
11	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
13	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
15	chr8:66638800-66655600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr8:66641800-66660000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:66645600-66686000	Weak transcription	HSMM	muscle
18	chr8:66646800-66664400	Weak transcription	Osteobl	bone
19	chr8:66646800-66670200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:66647000-66655600	Weak transcription	Esophagus	oesophagus
21	chr8:66647000-66658800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:66647200-66657200	Weak transcription	NHDF-Ad	bronchial
23	chr8:66647400-66664600	Weak transcription	Brain Germinal Matrix	brain
24	chr8:66647600-66660600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:66647600-66662000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:66647600-66670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:66648000-66668000	Weak transcription	Liver	Liver
30	chr8:66648600-66668000	Weak transcription	Fetal Brain Female	brain
31	chr8:66649000-66668000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:66650000-66671400	Weak transcription	Right Ventricle	heart
35	chr8:66651000-66671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
38	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
39	chr8:66651400-66673800	Weak transcription	NHLF	lung
40	chr8:66651600-66656800	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:66651600-66657400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr8:66651600-66658400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:66651600-66659400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:66651600-66662800	Weak transcription	Ovary	ovary
45	chr8:66651600-66662800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:66651600-66663200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:66651600-66671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:66651600-66671000	Weak transcription	Fetal Stomach	stomach
49	chr8:66651600-66671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:66651600-66672800	Weak transcription	Hela-S3	cervix

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