Variant report

Variant	rs17396004
Chromosome Location	chr8:66649521-66649522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66646650..66648902-chr8:66649150..66651692,2	K562	blood:
2	chr8:66649066..66651698-chr8:66653132..66654772,2	K562	blood:
3	chr8:66634318..66636259-chr8:66648468..66650206,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16932315	1.00[GIH][hapmap];0.86[TSI][hapmap]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17304551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17304921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395394	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395816	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17396066	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17396192	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3935203	1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4392943	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996048	1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7001138	1.00[MEX][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv395893	chr8:66647130-66651736	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
7	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
8	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:66628400-66650200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:66628400-66651600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr8:66628400-66652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:66628400-66652800	Strong transcription	Primary B cells from cord blood	blood
18	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr8:66628400-66666600	Strong transcription	Dnd41	blood
20	chr8:66633800-66653800	Weak transcription	K562	blood
21	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:66635400-66654400	Weak transcription	Small Intestine	intestine
23	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
24	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
26	chr8:66635600-66655000	Weak transcription	HSMMtube	muscle
27	chr8:66637000-66650600	Weak transcription	Fetal Lung	lung
28	chr8:66638800-66655600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:66639200-66654400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:66640800-66652000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:66641200-66654400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr8:66641800-66651200	Strong transcription	Left Ventricle	heart
33	chr8:66641800-66651600	Strong transcription	Fetal Intestine Small	intestine
34	chr8:66641800-66651600	Strong transcription	Fetal Muscle Leg	muscle
35	chr8:66641800-66651800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:66641800-66653000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr8:66641800-66653400	Strong transcription	Thymus	Thymus
38	chr8:66641800-66655000	Strong transcription	GM12878-XiMat	blood
39	chr8:66641800-66660000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:66642000-66651800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr8:66642000-66651800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr8:66642200-66651200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:66642800-66652000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:66642800-66652000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:66642800-66652000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:66642800-66652000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr8:66643200-66652600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:66644000-66655000	Weak transcription	HepG2	liver
49	chr8:66644200-66651800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr8:66644600-66651600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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