Variant report

Variant	rs17395190
Chromosome Location	chr8:66581058-66581059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:66581044-66581094	PrEC	prostate:	n/a
2	chr8:66581044-66581094	Caco-2	colon:	n/a
3	chr8:66581044-66581094	A549	lung:	n/a
4	chr8:66581044-66581094	HepG2	liver:	n/a
5	chr8:66581044-66581094	HCF	heart:	n/a
6	chr8:66581044-66581094	AG10803	skin:	n/a
7	chr8:66581044-66581094	GM19239	blood:	n/a
8	chr8:66581044-66581094	HL-60	blood:	n/a
9	chr8:66581044-66581094	HPAEpiC	pulmonary alveolar:	n/a
10	chr8:66581044-66581094	HIPEpiC	eye:	n/a
11	chr8:66581044-66581094	CMK	blood:	n/a
12	chr8:66581044-66581094	AG09319	gingival:	n/a
13	chr8:66581044-66581094	T-47D	breast:	n/a
14	chr8:66581044-66581094	NT2-D1	testis:	n/a
15	chr8:66581044-66581094	PFSK-1	brain:	n/a
16	chr8:66581044-66581094	H1-hESC	embryonic stem cell:	embryo
17	chr8:66581044-66581094	SK-N-SH_RA	brain:	n/a
18	chr8:66581044-66581094	K562	blood:	n/a
19	chr8:66581044-66581094	Jurkat	blood:	n/a
20	chr8:66581044-66581094	HEEpiC	esophagus:	n/a
21	chr8:66581044-66581094	AoSMC	blood vessel:	n/a
22	chr8:66581044-66581094	BE2_C	brain:	n/a
23	chr8:66581044-66581094	MCF-7	breast:	n/a
24	chr8:66581044-66581094	PANC-1	pancreas:	n/a
25	chr8:66581044-66581094	LNCaP	prostate:	n/a
26	chr8:66581044-66581094	SK-N-MC	brain:	n/a
27	chr8:66581044-66581094	Hela-S3	cervix:	n/a
28	chr8:66581044-66581094	HRCEpiC	kidney:	n/a
29	chr8:66581044-66581094	NB4	blood:	n/a
30	chr8:66581044-66581094	NHBE	bronchial:	n/a
31	chr8:66581044-66581094	BJ	skin:	n/a
32	chr8:66581044-66581094	GM12891	blood:	n/a
33	chr8:66581044-66581094	GM12878	blood:	n/a
34	chr8:66581044-66581094	HCPEpiC	choroid plexus:	n/a
35	chr8:66581044-66581094	HCM	heart:	n/a
36	chr8:66581044-66581094	SK-N-SH	brain:	n/a
37	chr8:66581044-66581094	ECC-1	luminal epithelium:	n/a
38	chr8:66581044-66581094	GM06990	blood:	n/a
39	chr8:66581044-66581094	AG09309	skin:	n/a
40	chr8:66581044-66581094	U87	brain:	n/a
41	chr8:66581044-66581094	MCF10A-Er-Src	breast:	n/a
42	chr8:66581044-66581094	ovcar-3	ovarian:	n/a
43	chr8:66581044-66581094	HRE	kidney:	n/a
44	chr8:66581044-66581094	AG04449	skin:	fetal
45	chr8:66581044-66581094	HUVEC	blood vessel:	n/a
46	chr8:66581044-66581094	HCT-116	colon:	n/a
47	chr8:66581044-66581094	HAEpiC	amniotic membrane:	n/a
48	chr8:66581044-66581094	HNPCEpiC	eye:	n/a
49	chr8:66581044-66581094	SAEC	small airway:	n/a
50	chr8:66581044-66581094	NH-A	brain:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66557301..66560077-chr8:66580234..66581875,2	K562	blood:
2	chr8:66557005..66560077-chr8:66579109..66581875,3	K562	blood:

No data

Variant related genes	Relation type
MTFR1	CpG island

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16932315	1.00[GIH][hapmap];0.86[TSI][hapmap]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17395394	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395816	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17396004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17396066	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17396192	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes]
rs3935203	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs4392943	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996048	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs7001138	1.00[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17395190	ARMC1	cis	lymphoblastoid	seeQTL

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558000-66582400	Weak transcription	Placenta	Placenta
2	chr8:66558000-66583400	Weak transcription	Aorta	Aorta
3	chr8:66558000-66585200	Weak transcription	Left Ventricle	heart
4	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:66567200-66616800	Weak transcription	Gastric	stomach
6	chr8:66571400-66590800	Weak transcription	Stomach Mucosa	stomach
7	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
8	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
10	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:66572000-66581200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:66572000-66583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:66572000-66583600	Weak transcription	Liver	Liver
14	chr8:66572000-66584000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:66572000-66584000	Weak transcription	HepG2	liver
16	chr8:66572000-66585200	Weak transcription	HSMM	muscle
17	chr8:66572000-66585600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:66572000-66594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:66572000-66595200	Weak transcription	HSMMtube	muscle
20	chr8:66572000-66595800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
23	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:66572000-66616600	Weak transcription	HMEC	breast
29	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
32	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:66572000-66619600	Weak transcription	NHEK	skin
34	chr8:66572000-66619800	Weak transcription	Lung	lung
35	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr8:66572200-66585200	Weak transcription	Primary B cells from cord blood	blood
37	chr8:66572200-66592000	Weak transcription	Hela-S3	cervix
38	chr8:66572200-66619800	Weak transcription	A549	lung
39	chr8:66572400-66595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:66573200-66583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:66573600-66584000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:66573600-66585200	Weak transcription	Dnd41	blood
43	chr8:66573800-66583000	Weak transcription	Fetal Stomach	stomach
44	chr8:66573800-66583400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:66573800-66595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
48	chr8:66574200-66582000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:66574200-66608600	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:66574400-66616800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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