Variant report

Variant	rs17395656
Chromosome Location	chr8:66630900-66630901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr8:66629390-66631265	PANC-1	pancreas:	n/a	chr8:66629774-66629783 chr8:66629773-66629782
2	POLR2A	chr8:66628232-66632311	K562	blood:	n/a	n/a
3	FOXA1	chr8:66630894-66631197	T-47D	breast:	n/a	n/a
4	POLR2A	chr8:66628388-66631684	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:66628832..66631353-chr8:66639914..66641880,2	K562	blood:
2	chr8:66630735..66632714-chr8:66718636..66720891,2	K562	blood:
3	chr8:66629100..66631894-chr8:66634676..66636367,2	K562	blood:
4	chr8:66623079..66625512-chr8:66628550..66631317,2	K562	blood:
5	chr8:66628174..66631200-chr8:66633706..66636943,3	K562	blood:
6	chr8:66629168..66631194-chr8:66635372..66637144,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272155	TF binding region
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16932315	1.00[GIH][hapmap];0.86[TSI][hapmap]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304551	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304921	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17395190	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395394	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395816	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395851	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17396004	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17396066	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17396192	0.87[GIH][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes]
rs3935203	0.81[AMR][1000 genomes]
rs4392943	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996048	0.81[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
2	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
5	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
6	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
7	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
9	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:66620400-66631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:66620400-66631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:66620800-66631200	Weak transcription	Placenta	Placenta
13	chr8:66620800-66632600	Weak transcription	Lung	lung
14	chr8:66620800-66633000	Weak transcription	Brain Angular Gyrus	brain
15	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
16	chr8:66621000-66631600	Weak transcription	Aorta	Aorta
17	chr8:66621000-66632600	Weak transcription	Brain Substantia Nigra	brain
18	chr8:66621000-66634800	Weak transcription	Ovary	ovary
19	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:66626200-66633800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
25	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
26	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr8:66627200-66640400	Strong transcription	Left Ventricle	heart
30	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr8:66627400-66637600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr8:66627400-66640400	Strong transcription	Thymus	Thymus
33	chr8:66627600-66631600	Weak transcription	Fetal Lung	lung
34	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:66628200-66631200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:66628200-66636400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:66628200-66640800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:66628400-66631000	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr8:66628400-66631000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:66628400-66631200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:66628400-66632200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr8:66628400-66635400	Strong transcription	Adipose Nuclei	Adipose
45	chr8:66628400-66635400	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr8:66628400-66635600	Strong transcription	Brain Germinal Matrix	brain
47	chr8:66628400-66636600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:66628400-66636600	Strong transcription	Fetal Brain Female	brain
49	chr8:66628400-66637200	Strong transcription	GM12878-XiMat	blood
50	chr8:66628400-66637800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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