Variant report

Variant	rs17395878
Chromosome Location	chr8:66636107-66636108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:66635958-66636211	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:66634454..66636927-chr8:66637677..66640769,3	K562	blood:
2	chr8:66631641..66633524-chr8:66633808..66636306,2	K562	blood:
3	chr8:66634318..66636259-chr8:66648468..66650206,2	K562	blood:
4	chr8:66628174..66631200-chr8:66633706..66636943,3	K562	blood:
5	chr8:66629100..66631894-chr8:66634676..66636367,2	K562	blood:
6	chr8:66629168..66631194-chr8:66635372..66637144,2	MCF-7	breast:
7	chr8:66634454..66636931-chr8:66637677..66639411,3	K562	blood:

No data

Variant related genes	Relation type
MTFR1	TF binding region
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17395190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395816	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17396004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17396066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17396192	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes]
rs3935203	0.81[AMR][1000 genomes]
rs4392943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996048	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv395873	chr8:66635856-66636488	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
4	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
6	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
11	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr8:66627200-66640400	Strong transcription	Left Ventricle	heart
16	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:66627400-66637600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:66627400-66640400	Strong transcription	Thymus	Thymus
19	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:66628200-66636400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:66628200-66640800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:66628400-66636600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:66628400-66636600	Strong transcription	Fetal Brain Female	brain
26	chr8:66628400-66637200	Strong transcription	GM12878-XiMat	blood
27	chr8:66628400-66637800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:66628400-66638000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:66628400-66638000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:66628400-66638000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:66628400-66640000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr8:66628400-66650200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr8:66628400-66651600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr8:66628400-66652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:66628400-66652800	Strong transcription	Primary B cells from cord blood	blood
36	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr8:66628400-66666600	Strong transcription	Dnd41	blood
38	chr8:66628800-66637000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:66630000-66638400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:66630400-66637800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:66630400-66639400	Strong transcription	Liver	Liver
42	chr8:66630600-66636600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:66630600-66637200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:66630600-66637800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr8:66630600-66638200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:66630600-66646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr8:66630800-66637000	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:66630800-66637600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:66631000-66637000	Strong transcription	NH-A	brain
50	chr8:66631000-66637200	Strong transcription	HUVEC	blood vessel

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