Variant report

Variant	rs4515591
Chromosome Location	chr8:66499465-66499466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17302765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17303038	1.00[AFR][1000 genomes]
rs17304488	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17304551	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17304921	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17394029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17394294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395190	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395394	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17395656	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395816	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs17395851	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17395920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17396004	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17396066	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17396192	0.85[AMR][1000 genomes]
rs35688380	0.81[AMR][1000 genomes]
rs3935203	0.81[AMR][1000 genomes]
rs4392943	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66491400-66505800	Weak transcription	Fetal Stomach	stomach
2	chr8:66491800-66512000	Weak transcription	Spleen	Spleen
3	chr8:66492000-66521000	Weak transcription	Lung	lung
4	chr8:66495800-66516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:66497000-66499800	Enhancers	Placenta	Placenta
6	chr8:66497200-66505000	Weak transcription	Ovary	ovary
7	chr8:66497600-66512000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:66498000-66516000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:66498400-66507000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:66498400-66512200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:66498600-66507000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:66498600-66516400	Weak transcription	Esophagus	oesophagus
13	chr8:66498800-66499800	Enhancers	Primary B cells from cord blood	blood
14	chr8:66498800-66499800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:66498800-66500000	Enhancers	Primary B cells from peripheral blood	blood
16	chr8:66498800-66500000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr8:66498800-66500000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:66498800-66500000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:66498800-66500000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr8:66498800-66500200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr8:66498800-66500200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:66498800-66500200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:66498800-66500200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr8:66498800-66500800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr8:66498800-66507000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:66498800-66521000	Weak transcription	Aorta	Aorta
27	chr8:66499000-66499600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr8:66499000-66500000	Enhancers	Primary T cells from cord blood	blood
29	chr8:66499000-66500000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:66499000-66500000	Enhancers	GM12878-XiMat	blood
31	chr8:66499000-66500200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr8:66499000-66503400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:66499000-66507000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:66499000-66514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:66499000-66521400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:66499200-66503200	Weak transcription	Brain Angular Gyrus	brain
37	chr8:66499200-66511000	Weak transcription	Brain Substantia Nigra	brain
38	chr8:66499200-66514200	Weak transcription	Osteobl	bone
39	chr8:66499200-66515400	Weak transcription	Brain Anterior Caudate	brain
40	chr8:66499200-66516400	Weak transcription	Gastric	stomach
41	chr8:66499200-66519200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:66499400-66499600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr8:66499400-66502200	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:66499400-66503400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:66499400-66514200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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