Variant report

Variant	rs73247935
Chromosome Location	chr4:26532954-26532955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10012565	0.82[AFR][1000 genomes]
rs13135516	0.83[EUR][1000 genomes]
rs1387542	0.98[EUR][1000 genomes]
rs1565296	0.82[EUR][1000 genomes]
rs1565297	0.83[EUR][1000 genomes]
rs1976170	0.83[EUR][1000 genomes]
rs2200840	0.85[EUR][1000 genomes]
rs4692540	0.84[EUR][1000 genomes]
rs4692542	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26531000-26533200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:26531000-26535400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:26531400-26533200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:26531800-26533000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:26531800-26533200	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:26532200-26533400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:26532200-26536600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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