Variant report

Variant	rs1565296
Chromosome Location	chr4:26531266-26531267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10939119	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13135516	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1387542	0.84[EUR][1000 genomes]
rs1565297	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1976170	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2200840	0.82[EUR][1000 genomes]
rs4692540	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4692542	0.81[EUR][1000 genomes]
rs73247935	0.82[EUR][1000 genomes]
rs902095	0.81[AMR][1000 genomes]
rs902096	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26528800-26532200	Enhancers	HSMMtube	muscle
2	chr4:26530000-26531800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:26530600-26531400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:26530600-26531600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:26530600-26531600	Enhancers	HSMM	muscle
6	chr4:26530600-26532000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:26530800-26531600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:26530800-26531600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:26530800-26531800	Enhancers	Colon Smooth Muscle	Colon
10	chr4:26530800-26531800	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:26531000-26533200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:26531000-26535400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:26531200-26532400	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links