Variant report

Variant	rs73248977
Chromosome Location	chr8:66838713-66838714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66837771..66840064-chr8:66901193..66903433,2	MCF-7	breast:
2	chr8:66836978..66839571-chr8:66839813..66842033,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16932444	1.00[EUR][1000 genomes]
rs73242979	1.00[AMR][1000 genomes]
rs73242992	1.00[AMR][1000 genomes]
rs73244816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66828200-66840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:66835800-66839000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr8:66835800-66839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:66836000-66838800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:66836200-66838800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:66836600-66841600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:66836600-66841600	Weak transcription	Fetal Thymus	thymus
8	chr8:66837200-66838800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:66837200-66839000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:66837400-66838800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:66837400-66842200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:66838000-66839000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:66838000-66839000	Enhancers	Primary T cells from cord blood	blood
14	chr8:66838000-66841600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:66838200-66841600	Weak transcription	Thymus	Thymus
16	chr8:66838400-66838800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:66838400-66838800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:66838400-66839000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr8:66838400-66839000	Enhancers	Brain Anterior Caudate	brain
20	chr8:66838600-66839000	Enhancers	HMEC	breast
21	chr8:66838600-66841000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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