Variant report

Variant	rs73244816
Chromosome Location	chr8:66787055-66787056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16932444	1.00[EUR][1000 genomes]
rs73242971	0.82[AFR][1000 genomes]
rs73242973	0.82[AFR][1000 genomes]
rs73242979	1.00[AMR][1000 genomes]
rs73242982	0.88[AFR][1000 genomes]
rs73242992	1.00[AMR][1000 genomes]
rs73244820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66783200-66789800	Weak transcription	Primary B cells from cord blood	blood
2	chr8:66785000-66789800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr8:66785200-66790800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:66786200-66787400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:66786200-66787400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:66786200-66787600	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:66786600-66789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:66787000-66787200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr8:66787000-66787200	Enhancers	Brain Substantia Nigra	brain
10	chr8:66787000-66787400	Enhancers	Brain Angular Gyrus	brain
11	chr8:66787000-66787600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:66787000-66787600	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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