Variant report
| Variant | rs73242973 |
|---|---|
| Chromosome Location | chr8:66775923-66775924 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66753401..66755256-chr8:66775471..66777848,2 | MCF-7 | breast: | |
| 2 | chr8:66751352..66757675-chr8:66773820..66778624,7 | K562 | blood: | |
| 3 | chr8:66756263..66758077-chr8:66774849..66777339,2 | MCF-7 | breast: | |
| 4 | chr8:66754050..66756297-chr8:66775531..66778624,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000205268 | Chromatin interaction |
| ENSG00000272192 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11992833 | 0.87[AMR][1000 genomes] |
| rs11993474 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11994363 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11994410 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57416148 | 0.87[AMR][1000 genomes] |
| rs57759707 | 0.87[AMR][1000 genomes] |
| rs57871763 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58020170 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58156571 | 0.87[AMR][1000 genomes] |
| rs59812763 | 0.87[AMR][1000 genomes] |
| rs73242921 | 0.87[AMR][1000 genomes] |
| rs73242933 | 0.87[AMR][1000 genomes] |
| rs73242959 | 0.87[AMR][1000 genomes] |
| rs73242967 | 0.87[AMR][1000 genomes] |
| rs73242968 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242975 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242979 | 1.00[EUR][1000 genomes] |
| rs73242981 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242982 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242984 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242992 | 1.00[EUR][1000 genomes] |
| rs73244804 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73244816 | 0.82[AFR][1000 genomes] |
| rs73244820 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023239 | chr8:66775321-66904124 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3440026 | chr8:66775357-66777018 | Weak transcription Active TSS Flanking Active TSS Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3390496 | chr8:66775633-66782628 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66774400-66779400 | Weak transcription | Thymus | Thymus |
