Variant report
| Variant | rs73242968 |
|---|---|
| Chromosome Location | chr8:66774138-66774139 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66751352..66757675-chr8:66773820..66778624,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272192 | Chromatin interaction |
| ENSG00000205268 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11992833 | 0.87[AMR][1000 genomes] |
| rs11993474 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11994363 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11994410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57416148 | 0.87[AMR][1000 genomes] |
| rs57759707 | 0.87[AMR][1000 genomes] |
| rs57871763 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58020170 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58156571 | 0.87[AMR][1000 genomes] |
| rs59812763 | 0.87[AMR][1000 genomes] |
| rs73242921 | 0.87[AMR][1000 genomes] |
| rs73242933 | 0.87[AMR][1000 genomes] |
| rs73242959 | 0.87[AMR][1000 genomes] |
| rs73242967 | 0.87[AMR][1000 genomes] |
| rs73242971 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242973 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242975 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242979 | 1.00[EUR][1000 genomes] |
| rs73242981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242982 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242984 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242992 | 1.00[EUR][1000 genomes] |
| rs73244804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
