Variant report
| Variant | rs73242967 |
|---|---|
| Chromosome Location | chr8:66772791-66772792 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000205268 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11992833 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11993474 | 0.87[AMR][1000 genomes] |
| rs11994363 | 0.87[AMR][1000 genomes] |
| rs11994410 | 0.87[AMR][1000 genomes] |
| rs16932340 | 1.00[EUR][1000 genomes] |
| rs57416148 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57759707 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57871763 | 0.87[AMR][1000 genomes] |
| rs58020170 | 0.87[AMR][1000 genomes] |
| rs58156571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59812763 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73240781 | 0.86[EUR][1000 genomes] |
| rs73240793 | 1.00[EUR][1000 genomes] |
| rs73242914 | 1.00[EUR][1000 genomes] |
| rs73242917 | 1.00[EUR][1000 genomes] |
| rs73242921 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242933 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242942 | 0.86[EUR][1000 genomes] |
| rs73242949 | 1.00[EUR][1000 genomes] |
| rs73242959 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242968 | 0.87[AMR][1000 genomes] |
| rs73242971 | 0.87[AMR][1000 genomes] |
| rs73242973 | 0.87[AMR][1000 genomes] |
| rs73242975 | 0.87[AMR][1000 genomes] |
| rs73242981 | 0.87[AMR][1000 genomes] |
| rs73242982 | 0.87[AMR][1000 genomes] |
| rs73242984 | 0.87[AMR][1000 genomes] |
| rs73244804 | 0.87[AMR][1000 genomes] |
| rs7463008 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66772400-66772800 | Enhancers | Primary T helper cells fromperipheralblood | blood |
