Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:66753401..66755256-chr8:66775471..66777848,2	MCF-7	breast:
2	chr8:66751352..66757675-chr8:66773820..66778624,7	K562	blood:
3	chr8:66754050..66756297-chr8:66775531..66778624,3	K562	blood:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11992833	0.87[AMR][1000 genomes]
rs11993474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57416148	0.87[AMR][1000 genomes]
rs57759707	0.87[AMR][1000 genomes]
rs57871763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58020170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58156571	0.87[AMR][1000 genomes]
rs59812763	0.87[AMR][1000 genomes]
rs73242921	0.87[AMR][1000 genomes]
rs73242933	0.87[AMR][1000 genomes]
rs73242959	0.87[AMR][1000 genomes]
rs73242967	0.87[AMR][1000 genomes]
rs73242968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242979	1.00[EUR][1000 genomes]
rs73242981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242992	1.00[EUR][1000 genomes]
rs73244804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244816	0.88[AFR][1000 genomes]
rs73244820	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3390496	chr8:66775633-66782628	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66774400-66779400	Weak transcription	Thymus	Thymus
2	chr8:66777000-66781600	Weak transcription	K562	blood
3	chr8:66777000-66782400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:66777200-66777600	ZNF genes & repeats	Dnd41	blood

Quick Search: