Variant report
| Variant | rs73242949 |
|---|---|
| Chromosome Location | chr8:66758065-66758066 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66756263..66758077-chr8:66774849..66777339,2 | MCF-7 | breast: | |
| 2 | chr8:66752979..66755042-chr8:66757030..66760922,3 | MCF-7 | breast: | |
| 3 | chr8:66755086..66757057-chr8:66757170..66760034,2 | MCF-7 | breast: | |
| 4 | chr8:66751463..66756785-chr8:66757093..66762344,8 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PDE7A | TF binding region |
| ENSG00000205268 | Chromatin interaction |
| ENSG00000272192 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11992833 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16932340 | 1.00[EUR][1000 genomes] |
| rs57416148 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57759707 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58156571 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59812763 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73240781 | 0.86[EUR][1000 genomes] |
| rs73240793 | 1.00[EUR][1000 genomes] |
| rs73242914 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242917 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242921 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242933 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242942 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs73242959 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73242967 | 1.00[EUR][1000 genomes] |
| rs7463008 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1793412 | chr8:66705321-66761366 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
