Variant report

Variant	rs73260622
Chromosome Location	chr8:64815854-64815855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10110399	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425597	1.00[ASN][1000 genomes]
rs1541750	0.96[EUR][1000 genomes]
rs2355594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483085	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859965	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34163926	1.00[ASN][1000 genomes]
rs6993329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649241	1.00[ASN][1000 genomes]
rs73258928	1.00[ASN][1000 genomes]
rs7842563	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8357	chr8:64783560-64852075	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64815600-64816400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:64815800-64816200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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