Variant report

Variant	rs6993329
Chromosome Location	chr8:64844655-64844656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10102099	0.84[AFR][1000 genomes]
rs10110399	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425597	1.00[ASN][1000 genomes]
rs1425602	0.84[AFR][1000 genomes]
rs1425608	0.84[AFR][1000 genomes]
rs1541750	0.96[EUR][1000 genomes]
rs16930736	0.84[AFR][1000 genomes]
rs1963375	0.84[AFR][1000 genomes]
rs2355594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483085	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859965	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34163926	1.00[ASN][1000 genomes]
rs7005981	0.84[AFR][1000 genomes]
rs72649241	1.00[ASN][1000 genomes]
rs73258928	1.00[ASN][1000 genomes]
rs73260622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842563	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8357	chr8:64783560-64852075	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv972553	chr8:64826295-64850240	Weak transcription Enhancers Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
5	esv3341537	chr8:64833447-64862817	Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
6	esv3692990	chr8:64835981-64850681	Active TSS Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
7	esv2762745	chr8:64838693-64850725	Enhancers Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	n/a
8	nsv526321	chr8:64843811-64847410	Inactive region	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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