Variant report

Variant	rs73262773
Chromosome Location	chr5:116904541-116904542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17141707	1.00[EUR][1000 genomes]
rs17141721	1.00[EUR][1000 genomes]
rs17141755	1.00[EUR][1000 genomes]
rs17141759	1.00[EUR][1000 genomes]
rs2162750	1.00[EUR][1000 genomes]
rs4260708	1.00[EUR][1000 genomes]
rs58752187	1.00[EUR][1000 genomes]
rs73254985	1.00[EUR][1000 genomes]
rs73256882	1.00[EUR][1000 genomes]
rs73258850	1.00[EUR][1000 genomes]
rs73258855	1.00[EUR][1000 genomes]
rs73262742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73269036	1.00[EUR][1000 genomes]
rs73269040	1.00[EUR][1000 genomes]
rs73269050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882758	chr5:116843143-116905052	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv599488	chr5:116857366-116905052	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116903400-116905400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:116903600-116905200	Enhancers	NHEK	skin
3	chr5:116903600-116905400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:116904400-116904800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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