Variant report

Variant	rs2162750
Chromosome Location	chr5:116766701-116766702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17141707	1.00[EUR][1000 genomes]
rs17141721	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17141755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4260708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56146566	1.00[EUR][1000 genomes]
rs56892707	1.00[AMR][1000 genomes]
rs58752187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254985	1.00[EUR][1000 genomes]
rs73256882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73258850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73258855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73262742	1.00[EUR][1000 genomes]
rs73262773	1.00[EUR][1000 genomes]
rs73264702	1.00[AMR][1000 genomes]
rs73266746	1.00[AMR][1000 genomes]
rs73266786	1.00[AMR][1000 genomes]
rs73270527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73785735	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116766600-116766800	Enhancers	Stomach Smooth Muscle	stomach
2	chr5:116766600-116767400	Enhancers	Colon Smooth Muscle	Colon
3	chr5:116766600-116767400	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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