Variant report

Variant	rs73269506
Chromosome Location	chr7:13837584-13837585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10232078	1.00[EUR][1000 genomes]
rs10252348	1.00[EUR][1000 genomes]
rs17167297	1.00[EUR][1000 genomes]
rs17167329	1.00[EUR][1000 genomes]
rs2116634	1.00[EUR][1000 genomes]
rs28472851	1.00[EUR][1000 genomes]
rs28475539	1.00[EUR][1000 genomes]
rs34833449	1.00[EUR][1000 genomes]
rs41379446	1.00[EUR][1000 genomes]
rs57062880	1.00[EUR][1000 genomes]
rs73260979	1.00[EUR][1000 genomes]
rs73260980	1.00[EUR][1000 genomes]
rs73260983	1.00[EUR][1000 genomes]
rs73260994	1.00[EUR][1000 genomes]
rs73269516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830909	chr7:13692329-13868294	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv433032	chr7:13792450-13911001	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887696	chr7:13801825-13857235	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv525915	chr7:13819302-13841798	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519601	chr7:13819968-13857235	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464388	chr7:13828099-13868913	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv606276	chr7:13828099-13868913	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13821800-13840400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:13836800-13837600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:13836800-13837600	Enhancers	HUVEC	blood vessel
4	chr7:13836800-13837800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:13836800-13838000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:13837000-13837800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:13837000-13837800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:13837000-13837800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:13837000-13837800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:13837000-13837800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:13837000-13838000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:13837200-13837600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:13837200-13837800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:13837400-13840600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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