Variant report

Variant	rs17167329
Chromosome Location	chr7:13695521-13695522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10232078	1.00[EUR][1000 genomes]
rs10252348	1.00[EUR][1000 genomes]
rs17167297	1.00[EUR][1000 genomes]
rs2116634	1.00[EUR][1000 genomes]
rs28472851	1.00[EUR][1000 genomes]
rs28475539	1.00[EUR][1000 genomes]
rs34833449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41379446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57062880	1.00[EUR][1000 genomes]
rs73260979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73269506	1.00[EUR][1000 genomes]
rs73269516	1.00[EUR][1000 genomes]
rs7791421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887690	chr7:13591197-13702169	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1026929	chr7:13597929-13716063	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1023839	chr7:13617615-13735946	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv887692	chr7:13641674-13718969	Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv1017756	chr7:13656136-13733606	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1017322	chr7:13661784-13733606	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887693	chr7:13673538-13718969	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv1029362	chr7:13679503-13733647	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv887694	chr7:13680696-13718969	ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	nsv1023309	chr7:13689412-13706565	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1033492	chr7:13690422-13746454	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv830909	chr7:13692329-13868294	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13688600-13697600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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