Variant report
| Variant | rs7791421 |
|---|---|
| Chromosome Location | chr7:13772863-13772864 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL4A-2 | chr7:13772127-13773383 | FPKM1_group_29192_transcript_5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10232078 | 1.00[EUR][1000 genomes] |
| rs10252348 | 1.00[EUR][1000 genomes] |
| rs17167297 | 1.00[EUR][1000 genomes] |
| rs17167329 | 1.00[EUR][1000 genomes] |
| rs2116634 | 1.00[EUR][1000 genomes] |
| rs28472851 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28475539 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34833449 | 1.00[EUR][1000 genomes] |
| rs41379446 | 1.00[EUR][1000 genomes] |
| rs57062880 | 1.00[EUR][1000 genomes] |
| rs73260979 | 1.00[EUR][1000 genomes] |
| rs73260980 | 1.00[EUR][1000 genomes] |
| rs73260983 | 1.00[EUR][1000 genomes] |
| rs73260994 | 1.00[EUR][1000 genomes] |
| rs73269506 | 1.00[EUR][1000 genomes] |
| rs73269516 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830909 | chr7:13692329-13868294 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv887695 | chr7:13704951-13819968 | Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018092 | chr7:13724921-13779479 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1034411 | chr7:13743365-13826756 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
