Variant report

Variant	rs73270703
Chromosome Location	chr5:115777238-115777239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115770336..115772692-chr5:115776003..115777932,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1421848	1.00[EUR][1000 genomes]
rs56710778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58664017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254607	1.00[EUR][1000 genomes]
rs73254624	1.00[EUR][1000 genomes]
rs73268907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270735	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7734602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
3	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:115757200-115782000	Weak transcription	Gastric	stomach
7	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:115768400-115777800	Weak transcription	Ovary	ovary
9	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
10	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
11	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
14	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
15	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
16	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
17	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
20	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
21	chr5:115773400-115777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:115773800-115779600	Weak transcription	Fetal Kidney	kidney
24	chr5:115774000-115777400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:115774000-115779000	Enhancers	Fetal Muscle Leg	muscle
26	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:115774400-115777800	Weak transcription	Right Ventricle	heart
28	chr5:115774400-115778200	Enhancers	Psoas Muscle	Psoas
29	chr5:115774400-115778400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr5:115774400-115779000	Enhancers	Fetal Heart	heart
31	chr5:115774400-115779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:115774600-115778400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
36	chr5:115775200-115779200	Enhancers	Right Atrium	heart
37	chr5:115775200-115781800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr5:115775400-115778400	Enhancers	Adipose Nuclei	Adipose
39	chr5:115775800-115778200	Enhancers	Fetal Muscle Trunk	muscle
40	chr5:115775800-115778400	Enhancers	Left Ventricle	heart
41	chr5:115775800-115781400	Enhancers	Fetal Brain Female	brain
42	chr5:115776000-115777400	Enhancers	GM12878-XiMat	blood
43	chr5:115776000-115778000	Enhancers	Fetal Thymus	thymus
44	chr5:115776000-115778400	Enhancers	Brain Germinal Matrix	brain
45	chr5:115776000-115778600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr5:115776000-115779200	Enhancers	Fetal Brain Male	brain
47	chr5:115776200-115777600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:115776200-115777800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:115776200-115778600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:115776200-115779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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