Variant report

Variant	rs7734602
Chromosome Location	chr5:115781341-115781342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr5:115780991-115781364	MCF-7	breast:	n/a	n/a
2	REST	chr5:115780983-115781349	PFSK-1	brain:	n/a	n/a
3	REST	chr5:115780996-115781470	ECC-1	luminal epithelium:	n/a	n/a
4	REST	chr5:115781066-115781367	Hela-S3	cervix:	n/a	n/a
5	REST	chr5:115781001-115781395	HL-60	blood:	n/a	n/a
6	REST	chr5:115780976-115781346	SK-N-SH	brain:	n/a	n/a
7	REST	chr5:115780936-115781419	ECC-1	luminal epithelium:	n/a	n/a
8	REST	chr5:115780958-115781422	MCF-7	breast:	n/a	n/a
9	REST	chr5:115781056-115781341	H1-hESC	embryonic stem cell:	n/a	n/a
10	TEAD4	chr5:115781092-115781407	A549	lung:	n/a	n/a
11	POLR2A	chr5:115780312-115781410	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000256121	TF binding region
ENSG00000248445	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1421848	1.00[EUR][1000 genomes]
rs56710778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58664017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254607	1.00[EUR][1000 genomes]
rs73254624	1.00[EUR][1000 genomes]
rs73268907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270703	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270735	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
3	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:115757200-115782000	Weak transcription	Gastric	stomach
5	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
7	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
8	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
9	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
10	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
12	chr5:115775200-115781800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:115775800-115781400	Enhancers	Fetal Brain Female	brain
14	chr5:115776600-115784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:115777200-115782000	Weak transcription	HepG2	liver
17	chr5:115777400-115782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:115778000-115782600	Weak transcription	Fetal Thymus	thymus
19	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:115778200-115781800	Weak transcription	Lung	lung
21	chr5:115778200-115781800	Weak transcription	Psoas Muscle	Psoas
22	chr5:115778200-115782000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:115778200-115782000	Weak transcription	Esophagus	oesophagus
24	chr5:115778200-115783000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:115778200-115785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:115778200-115787600	Weak transcription	HMEC	breast
27	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:115778400-115781800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:115778400-115781800	Weak transcription	Right Ventricle	heart
30	chr5:115778400-115782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:115778400-115782000	Weak transcription	Adipose Nuclei	Adipose
32	chr5:115778400-115782000	Weak transcription	Liver	Liver
33	chr5:115778400-115782000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:115778400-115782200	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
36	chr5:115778600-115781600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr5:115778600-115782200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
39	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
40	chr5:115779200-115782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
42	chr5:115779400-115781600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:115779400-115782400	Strong transcription	Fetal Intestine Large	intestine
44	chr5:115779400-115784400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr5:115779400-115784400	Strong transcription	Fetal Intestine Small	intestine
46	chr5:115779800-115782000	Weak transcription	Aorta	Aorta
47	chr5:115780000-115781800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:115780200-115783800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:115780200-115784000	Strong transcription	Fetal Stomach	stomach
50	chr5:115780200-115784800	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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